Using PowerShell, you can update SharePoint navigation items.
Example for: Display only the navigation items below the current site
$SiteCollection = Get-SPSite "http://taco/SiteCollection/"
foreach ($subSite in $SiteCollection.AllWebs)
{
$updateSite = [Microsoft.SharePoint.Publishing.PublishingWeb]::GetPublishingWeb($subSite)
$updateSite.Navigation.InheritCurrent = $false
$updateSite.Navigation.ShowSiblings = $false
$subSite.Dispose()
}
$SiteCollection.Dispose()